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c1 fluidigm platform  (fluidigm)


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    Structured Review

    fluidigm c1 fluidigm platform
    C1 Fluidigm Platform, supplied by fluidigm, used in various techniques. Bioz Stars score: 96/100, based on 2081 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/c1+platform/pm41534523-343-5-6?v=fluidigm
    Average 96 stars, based on 2081 article reviews
    c1 fluidigm platform - by Bioz Stars, 2026-06
    96/100 stars

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    (a) Scheme of GRN analysis <t>using</t> <t>Fluidigm</t> <t>C1</t> scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.
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    (a) Scheme of GRN analysis <t>using</t> <t>Fluidigm</t> <t>C1</t> scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.
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    Image Search Results


    (a) Scheme of GRN analysis using Fluidigm C1 scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.

    Journal: bioRxiv

    Article Title: Hox – Meis -relayed topographical genetic switch underlies cardiopharyngeal neural crest diversification, revealed by multimodal analysis

    doi: 10.1101/2025.11.09.687497

    Figure Lengend Snippet: (a) Scheme of GRN analysis using Fluidigm C1 scRNA-seq data. Dashed-line boxes indicate the TF subnetwork, which was divided into overlapping communities. Each TF is connected to its first-edge targets to define “overall communities” (OCs). (b) Heatmap showing the enrichment of representative OCs across integrated clusters. Color scale represents z-scored enrichment values. (c) UMAP plots showing representative OC enrichment patterns, colored by cluster identity as in (d) with intensity indicating enrichment levels. (d) Schematic representation of NCC lineage trajectories annotated with OCs and key TFs.

    Article Snippet: To elucidate these GRNs, we utilized additional scRNA-seq datasets from EYFP + NCCs isolated at E11.5, E12.5, E14.5 and E17.5 from Wnt1-Cre;R26R-EYFP mouse hearts, generated using the Fluidigm C1 platform.

    Techniques: